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1

The effect of cell geometry on polarization in budding yeast

Trogdon, Michael, Drawert, Brian, Gomez, Carlos, Banavar, Samhita P., Yi, Tau-Mu, Campàs, Otger, Petzold, Linda R., Shahrezaei, Vahid

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 10.18 MB

english, 2018

2

Recognition of related proteins by iterative template refinement (ITR)

Tau-Mu Yi, Eric S. Lander

Journal:

Protein Science

Year:

1994

Language:

english

File:

PDF, 1.24 MB

english, 1994

3

Validation data for a hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) method

Drawert, Brian, Jacob, Bruno, Li, Zhen, Yi, Tau-Mu, Petzold, Linda

Journal:

Year:

2019

Language:

english

File:

PDF, 310 KB

english, 2019

4

Some protein interaction data do not exhibit power law statistics

Reiko Tanaka, Tau-Mu Yi, John Doyle

Journal:

Year:

2005

Language:

english

File:

PDF, 222 KB

english, 2005

5

[Methods in Enzymology] Computer Methods for Macromolecular Sequence Analysis Volume 266 || [19] Iterative template refinement: Protein-fold prediction using iterative search and hybrid sequence/structure templates

Year:

1996

Language:

english

File:

PDF, 851 KB

english, 1996

6

Spatial Stochastic Dynamics Enable Robust Cell Polarization

Lawson, Michael J., Drawert, Brian, Khammash, Mustafa, Petzold, Linda, Yi, Tau-Mu, Alber, Mark S.

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 2.61 MB

english, 2013

7

A hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) for advection–diffusion–reaction problems

Drawert, Brian, Jacob, Bruno, Li, Zhen, Yi, Tau-Mu, Petzold, Linda

Journal:

Journal of Computational Physics

Year:

2018

Language:

english

File:

PDF, 1.89 MB

english, 2018

8

Protein Secondary Structure Prediction Using Nearest-neighbor Methods

Tau-Mu Yi, Eric S. Lander

Journal:

Journal of Molecular Biology

Year:

1993

File:

PDF, 739 KB

1993

9

Modeling Robustness Tradeoffs in Yeast Cell Polarization Induced by Spatial Gradients

Chou, Ching-Shan, Nie, Qing, Yi, Tau-Mu, Lew, Daniel

Journal:

Year:

2008

Language:

english

File:

PDF, 1023 KB

english, 2008

10

Modelling of Yeast Mating Reveals Robustness Strategies for Cell-Cell Interactions

Chen, Weitao, Nie, Qing, Yi, Tau-Mu, Chou, Ching-Shan, Edelstein-Keshet, Leah

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 5.77 MB

english, 2016

11

A framework for discrete stochastic simulation on 3D moving boundary domains

Drawert, Brian, Hellander, Stefan, Trogdon, Michael, Yi, Tau-Mu, Petzold, Linda

Journal:

The Journal of Chemical Physics

Year:

2016

Language:

english

File:

PDF, 9.42 MB

english, 2016

12

Signaling regulated endocytosis and exocytosis lead to mating pheromone concentration dependent morphologies in yeast

Ching-Shan Chou, Travis I. Moore, Steven D. Chang, Qing Nie, Tau-Mu Yi

Journal:

Year:

2012

Language:

english

File:

PDF, 893 KB

english, 2012

13

[IEEE 2007 41st Annual Conference on Information Sciences and Systems - Baltimore, MD, USA (2007.03.14-2007.03.16)] 2007 41st Annual Conference on Information Sciences and Systems - Coping with Noise in E. coli Chemotaxis

Andrews, Burton W., Iglesias, Pablo A., Yi, Tau-Mu

Year:

2007

Language:

english

File:

PDF, 134 KB

english, 2007

14

Optimal Noise Filtering in the Chemotactic Response of Escherichia coli

Andrews, Burton W., Yi, Tau-Mu, Iglesias, Pablo A.

Journal:

PLoS Computational Biology

Year:

2006

Language:

english

File:

PDF, 933 KB

english, 2006

15

Rabbit muscle creatine kinase: genomic cloning, sequencing, and analysis of upstream sequences important for expression in myocytes

Yi, Tau-Mu, Walsh, Kenneth, Schimmel, Paul

Journal:

Nucleic Acids Research

Year:

1991

Language:

english

File:

PDF, 2.52 MB

english, 1991

16

The Effects of Replacing Sst2 with the Heterologous RGS4 on Polarization and Mating in Yeast

Tanaka, Hiromasa, Yi, Tau-Mu

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 605 KB

english, 2010

17

Noise filtering tradeoffs in spatial gradient sensing and cell polarization response

Ching-Shan Chou, Lee Bardwell, Qing Nie, Tau-Mu Yi

Journal:

BMC Systems Biology

Year:

2011

Language:

english

File:

PDF, 606 KB

english, 2011

18

Modeling Yeast Cell Polarization Induced by Pheromone Gradients

Tau-Mu Yi, Shanqin Chen, Ching-Shan Chou, Qing Nie

Journal:

Journal of Statistical Physics

Year:

2007

Language:

english

File:

PDF, 284 KB

english, 2007

19

Alternative cell polarity behaviours arise from changes in G-protein spatial dynamics

Chou, Ching-Shan, Yi, Tau-Mu, Nie, Qing, Moore, Travis I.

Journal:

IET Systems Biology

Year:

2015

Language:

english

File:

PDF, 1.04 MB

english, 2015

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